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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" dtd-version="1.4" article-type="research-article" xml:lang="en"><front><journal-meta><journal-title-group><journal-title xml:lang="ru">Теоретическая и прикладная экология</journal-title></journal-title-group><issn publication-format="print">1995-4301</issn><issn publication-format="electronic">2618-8406</issn></journal-meta><article-meta><article-id pub-id-type="doi">10.25750/1995-4301-2026-3-017-030</article-id><article-categories><subj-group><subject>Other</subject></subj-group></article-categories><title-group><article-title xml:lang="ru">О применении искусственного интеллекта и больших языковых моделей в области почвенно-экологических исследований (обзор)</article-title><trans-title-group xml:lang="en"><trans-title>On the application of artificial intelligence and large language models in soil and environmental research: a review</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="ru"><surname>Боков</surname><given-names>Н. А.</given-names></name><name xml:lang="en"><surname>Bokov</surname><given-names>N. A.</given-names></name></name-alternatives><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/><email>biotekhnologiya@fanc-sv.ru</email><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1000-1192</contrib-id></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="ru"><surname>Широких</surname><given-names>Н. Г.</given-names></name><name xml:lang="en"><surname>Shirokikh</surname><given-names>I. G.</given-names></name></name-alternatives><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff3"/><xref ref-type="aff" rid="aff2"/><xref ref-type="aff" rid="aff4"/><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3319-2729</contrib-id></contrib><aff-alternatives id="aff1"><aff><institution xml:lang="en">Federal Agricultural Research Center of North-East named N. V. Rudnitsky</institution><city xml:lang="en">Kirov</city><country xml:lang="en">Russia</country></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="ru">Федеральный аграрный научный центр Северо-Востока им. Н. В. Рудницкого</institution><city xml:lang="ru">Киров</city><country xml:lang="ru">Россия</country></aff></aff-alternatives><aff-alternatives id="aff3"><aff><institution xml:lang="en">Institute of Biology of Komi Science Centre of the Ural Branch of the Russian Academy of Sciences</institution><city xml:lang="en">Syktyvkar</city><country xml:lang="en">Russia</country></aff></aff-alternatives><aff-alternatives id="aff4"><aff><institution xml:lang="ru">Институт биологии Коми научного центра Уральского отделения Российской академии наук</institution><city xml:lang="ru">Сыктывкар</city><country xml:lang="ru">Россия</country></aff></aff-alternatives></contrib-group><pub-date pub-type="epub" iso-8601-date="2026-09-29"><day>29</day><month>09</month><year>2026</year></pub-date><issue>3</issue><fpage>17</fpage><lpage>30</lpage><self-uri xlink:href="http://www.envjournal.ru/arhvr.php?q=1009" xlink:title="http://www.envjournal.ru/arhvr.php?q=1009">http://www.envjournal.ru/arhvr.php?q=1009</self-uri><self-uri content-type="pdf" xlink:href="publication-3ddf76cb-571b-4567-9039-e80ecf002c86.pdf" xlink:title="PDF"/><abstract xml:lang="ru"><p>В последние годы в научных исследованиях активно развиваются методы, основанные на использовании искусственного интеллекта (ИИ) и больших языковых моделей (БИМ), которые способны обрабатывать и интерпретировать значительные объёмы текстовой и структурированной (таблицы, числовые и категориальные данные, данные датчиков и т. п.) информации. Экология почвы как область, характеризующаяся быстрым накоплением разнородных данных, включая результаты метагеномных анализов почвенных микробиомов, может потенциально извлечь существенную пользу от применения подобных инструментов. В настоящем обзоре рассмотрены основные направления использования ИИ в исследованиях в области почвенной экологии и микробиологии, включая анализ научной литературы, аннотирование и систематизацию микробиологических, агрохимических и агрофизических данных, а также создание моделей для прогнозирования на основе метагеномных данных почвенных микробиомов показателей плодородия и продуктивности сельскохозяйственных угодий. Обсуждаются ключевые преимущества данных подходов, их ограничения и возможные методологические риски. Несмотря на необходимость дальнейшего усовершенствования и оптимизации имеющихся к настоящему времени технологий ИИ и БИМ, выполненный анализ литературы свидетельствует об их значительном потенциале в обеспечении дальнейшего развития почвенно-экологических исследований и достижении практических результатов в аграрном производстве.</p></abstract><abstract xml:lang="en" abstract-type="summary"><p>In recent years, scientific research has seen the rapid development of methods based on artificial intelligence (AI) and large language models (LLMs), which are capable of processing and interpreting significant volumes of text and structured information, including tables, numerical and categorical data, and sensor data and other heterogeneous information, using specialized and multimodal AI systems. Soil ecology, as a field characterized by the rapid accumulation of heterogeneous data, including the results of metagenomic analyses of soil microbiomes, can potentially benefit significantly from the application of such tools. The aim of this review is to identify, analyze, and summarize current approaches to the use of AI and LLM technologies in soil and environmental research. The review examines the main areas of AI application, including scientific literature search and analysis, semantic search for relevant publications, citation mapping, text summarization, and the use of generative AI assistants. Particular attention is paid to the application of AI methods in the analysis of soil microbiomes and to the potential use of metagenomic data for predicting soil fertility and agricultural productivity. The challenges associated with adapting AI methods originally developed for biomedical research to the specific characteristics of soil and environmental datasets are also considered. The key advantages of these approaches, their limitations, and potential methodological risks, including those related to data quality and the reliability of AI-generated information, are discussed. Despite the need for further improvement and optimization of currently available AI and LLM technologies, the literature review demonstrates their significant potential for advancing soil and environmental research and supporting practical applications in agriculture.</p></abstract><kwd-group xml:lang="ru"><kwd>искусственный интеллект</kwd><kwd>нейронные сети</kwd><kwd>машинное обучение</kwd><kwd>большие языковые модели</kwd><kwd>экология микроорганизмов</kwd><kwd>почвенный микробиом</kwd><kwd>метагеномика</kwd><kwd>аграрное производство</kwd></kwd-group><kwd-group xml:lang="en"><kwd>artificial intelligence</kwd><kwd>neural networks</kwd><kwd>machine learning</kwd><kwd>large language models</kwd><kwd>microbial ecology</kwd><kwd>soil microbiome</kwd><kwd>metagenomics</kwd><kwd>agricultural production</kwd></kwd-group><funding-group><funding-statement xml:lang="ru">Работа выполнена в рамках Государственных заданий ФАНЦ Северо-Востока имени Н.В. Рудницкого (тема № FNWE-2025-0005) и ФИЦ «Коми научный центр Уральского отделения Российской академии наук» (по теме «Оценка состояния трансформированных экосистем подзоны южной тайги, методические подходы к их биоремедиации», номер государственной регистрации в ЕГИСУ № 125021402208-5).</funding-statement></funding-group></article-meta></front><back><ref-list><ref id="ref1"><mixed-citation publication-type="other" xml:lang="en">Dobrovol’skii G.V. Dokuchaev and present-day natural science // Eurasian Soil Sc. 1996. V. 29. No. 2. P. 105–110.</mixed-citation></ref><ref id="ref2"><mixed-citation publication-type="other" xml:lang="en">Dokuchaev V.V. Essays: in 9 volumes. Moskva; Leningrad: Publishing House of the USSR Academy of Sciences, 1949–1961. (in Russian).</mixed-citation></ref><ref id="ref3"><mixed-citation publication-type="other" xml:lang="en">Montgomery D.R. Soil erosion and agricultural sustainability // Proc. Natl. Acad. Sci. USA. 2007. V. 104. No. 33. P. 13268–13272. doi: 10.1073/pnas.0611508104</mixed-citation></ref><ref id="ref4"><mixed-citation publication-type="other" xml:lang="en">Dobrovolskiy G.V. Soil degradation as a threat of global ecological crisis // Vek globalizatsii. 2008. No. 2. P. 54–65 (in Russian).</mixed-citation></ref><ref id="ref5"><mixed-citation publication-type="other" xml:lang="en">Giller K.E., Delaune T., Silva J.V., Descheemaeker K., van de Ven G., Schut A.G.T., van Wijk M., Hammond J., Hochman Z., Taulya G., Chikowo R., Narayanan S., Kishore A., Bresciani F., Teixeira H.M., Andersson J.A., van Ittersum M.K. The future of farming: who will pro- duce our food? // Food Sec. 2021. V. 13. P. 1073–1099. doi: 10.1007/s12571-021-01184-6</mixed-citation></ref><ref id="ref6"><mixed-citation publication-type="other" xml:lang="en">Kurmanbayev A.A., Syndet T.R. Soil health con- cept and modern soil health indicators // Soil Science and Agrichemistry. 2023. No. 2. P. 91–106 (in Russian). doi: 10.51886/1999-740Х_2023_2_91</mixed-citation></ref><ref id="ref7"><mixed-citation publication-type="other" xml:lang="en">Nikitin D.A., Semenov M.V., Chernov T.I., Kseno- fontova N.A., Zhelezova A.D., Ivanova E.A., Khitrov N.B., Stepanov A.L. Microbiological indicators of ecological soil functions: a review // Eurasian Soil Sc. 2022. V. 55. P. 221–234. doi: 10.1134/S1064229322020090</mixed-citation></ref><ref id="ref8"><mixed-citation publication-type="other" xml:lang="en">Golubev A.S., Berestetskiy A.O. Future direc- tions for use of biological and biorational herbicides in Russia (review) // Agricultural Biology. 2021. V. 56. No. 5. P. 868–884 (in Russian). doi: 10.15389/ agrobiology.2021.5.868rus</mixed-citation></ref><ref id="ref9"><mixed-citation publication-type="other" xml:lang="en">Mohanty L.K., Singh N.K., Raj P., Prakash A., Tiwari A.K., Singh V., Sachan P. Nurturing crops, en- hancing soil health, and sustaining agricultural prosperity worldwide through agronomy // J. Exp. Agric. Int. 2024. V. 46. No. 2. P. 46–67. doi: 10.9734/jeai/2024/v46i22308</mixed-citation></ref><ref id="ref10"><mixed-citation publication-type="other" xml:lang="en">Ryazanov S.S., Kulagina V.I. Soil health: an overview of concepts and monitoring methods // Moscow Univ. Soil Sci. Bull. 2026. V. 81. P. 16–31. doi: 10.3103/</mixed-citation></ref><ref id="ref11"><mixed-citation publication-type="other" xml:lang="en">Slobodkin A.I., Slobodkina G.B. Diversity of sul- fur-disproportionating microorganisms // Microbiology. 2019. V. 88. P. 509–522. doi: 10.1134/S0026261719050138</mixed-citation></ref><ref id="ref12"><mixed-citation publication-type="other" xml:lang="en">Zavarzina D.G. The role of dissimilatory Fe(III)- reducing bacteria in transformation of iron minerals // Paleontol. J. 2004. V. 38. No. 3. P. 231–237.</mixed-citation></ref><ref id="ref13"><mixed-citation publication-type="other" xml:lang="en">Vecherskii M.V., Semenov M.V., Lisenkova A.A., Stepankov A.A. Metagenomics: a new direction in eco- logy // Biol. Bull. Russ. Acad. Sci. 2022. V. 48. Suppl. 3. P. S107–S117. doi: 10.1134/S1062359022010150</mixed-citation></ref><ref id="ref14"><mixed-citation publication-type="other" xml:lang="en">Semenov M.V. Metabarcoding and metagenomics in soil ecological research: achievements, problems and opportunities // Biol. Bull. Rev. 2021. V. 11. P. 40–53. doi: 10.1134/S2079086421010084</mixed-citation></ref><ref id="ref15"><mixed-citation publication-type="other" xml:lang="en">Nesme J., Achouak W., Agathos S.N., Bailey M., Baldrian P., Brunel D., Frostegård Å., Heulin T., Jansson J.K., Jurkevitch E., Kruus K.L., Kowalchuk G.A., Lagares A., Lappin-Scott H.M., Lemanceau P., Le Paslier D., Mandic-Mulec I., Murrell J.C., Myrold D.D., Nalin R., Nan- nipieri P., Neufeld J.D., O’Gara F., Parnell J.J., Pühler A., Py- lro V., Ramos J.L., Roesch L.F.W., Schloter M., Schleper C., Sczyrba A., Sessitsch A., Sjöling S., Sørensen J., Sørensen S.J., Tebbe C.C., Topp E., Tsiamis G., van Elsas J.D., van Keulen G., Widmer F., Wagner M., Zhang T., Zhang X., Zhao L., Zhu Y.G., Vogel T.M., Simonet P. Back to the future of soil metagenomics // Front. Microbiol. 2016. V. 7. Article No. 73. doi: 10.3389/fmicb.2016.00073</mixed-citation></ref><ref id="ref16"><mixed-citation publication-type="other" xml:lang="en">Leite M.F.A., van den Broek S.W.E.B., Kuramae E.E. Current challenges and pitfalls in soil metagenomics // Microorganisms. 2022. V. 10. No. 10. Article No. 1900. doi: 10.3390/microorganisms10101900</mixed-citation></ref><ref id="ref17"><mixed-citation publication-type="other" xml:lang="en">Wydro U. Soil microbiome study based on DNA extraction: a review // Water. 2022. V. 14. No. 24. Article No. 3999. doi: 10.3390/w14243999</mixed-citation></ref><ref id="ref18"><mixed-citation publication-type="other" xml:lang="en">Veselovsky V., Romanov M., Zoruk P., Larin A., Babenko V., Morozov M., Strokach A., Zakharevich N., Khamidova S., Danilova A., Vatlin A., Pavshintsev V., Chenguang F., Tsybizov D., Mitkin N., Galanova O., Zakharenko A., Golokhvast K., Klimina K. Compara- tive evaluation of sequencing platforms: Pacific Biosci- ences, Oxford Nanopore Technologies, and Illumina for 16S rRNA-based soil microbiome profiling // Front. Mi- crobiol. 2025. V. 16. Article No. 1633360. doi: 10.3389/ fmicb.2025.1633360</mixed-citation></ref><ref id="ref19"><mixed-citation publication-type="other" xml:lang="en">D’Argenio V. The high-throughput analyses era: are we ready for the data struggle? // High Throughput. 2018. V. 7. No. 1. Article No. 8. doi: 10.3390/ht7010008</mixed-citation></ref><ref id="ref20"><mixed-citation publication-type="other" xml:lang="en">Sharpton T.J. An introduction to the analysis of shotgun metagenomic data // Front. Plant Sci. 2014. V. 5. Article No. 209. doi: 10.3389/fpls.2014.00209</mixed-citation></ref><ref id="ref21"><mixed-citation publication-type="other" xml:lang="en">Panciu B.-I., Barbu Dragne G.-L. A.I. in agri- culture – a bibliometric approach // Proceedings of the International Conference on Business Excellence. 2025. V. 19. No. 1. P. 5189–5199. doi: 10.2478/picbe-2025-0397</mixed-citation></ref><ref id="ref22"><mixed-citation publication-type="other" xml:lang="en">Zhao Y., Liang J., Chen B., Deng X., Zhang Y., Xiong Z., Pan M., Meng X. Applications research progress and prospects of multi-agent large language models in agricultural // Smart Agric. 2025. V. 7. No. 5. P. 37–51. doi: 10.12133/j.smartag.SA202503026</mixed-citation></ref><ref id="ref23"><mixed-citation publication-type="other" xml:lang="en">Sirilertmekasakul C., Rattanawong W., Gong- vatana A., Srikiatkhachorn A. The current state of artificial intelligence-augmented digitized neurocognitive screen- ing test // Front. Hum. Neurosci. 2023. V. 17. Article No. 1133632. doi: 10.3389/fnhum.2023.1133632</mixed-citation></ref><ref id="ref24"><mixed-citation publication-type="other" xml:lang="en">Saied M., Mokhtar N., Badr A., Adel M., Boles P., Khoriba G. AI in literature reviews: a survey of current and emerging methods // Proceedings of the 2024 International Mobile, Intelligent, and Ubiquitous Computing Conference (MIUCC). Cairo, Egypt, 2024. P. 61–65. doi: 10.1109/</mixed-citation></ref><ref id="ref25"><mixed-citation publication-type="other" xml:lang="en">Naudé W. Artificial intelligence vs COVID-19: limitations, constraints and pitfalls // AI &amp; Soc. 2020. V. 35. No. 3. P. 761–765. doi: 10.1007/s00146-020-00978-0</mixed-citation></ref><ref id="ref26"><mixed-citation publication-type="other" xml:lang="en">Gerlich M. AI tools in society: impacts on cognitive offloading and the future of critical thinking // Societies. 2025. V. 15. No. 1. Article No. 6. doi: 10.3390/soc15010006</mixed-citation></ref><ref id="ref27"><mixed-citation publication-type="other" xml:lang="en">Schmidt L., Cree I., Campbell F., WCT EVI MAP group. Digital tools to support the systematic review pro- cess: an introduction // J. Eval. Clin. Pract. 2025. V. 31. No. 3. Article No. e70100. doi: 10.1111/jep.70100</mixed-citation></ref><ref id="ref28"><mixed-citation publication-type="other" xml:lang="en">Filimonov V.Yu. Large language models and their role in modern scientific discoveries // Philosophical Prob- lems of IT and Cyberspace (PhilIT&amp;C). 2024. V. 25. No. 1. P. 42–57 (in Russian). doi: 10.17726/philIT.2024.1.3</mixed-citation></ref><ref id="ref29"><mixed-citation publication-type="other" xml:lang="en">Mtotywa M.M., Mowers J.L.J., Ndou W., Mole- ko T.V.Q., Ledwaba M.J. Artificial intelligence in lit- erature review synthesis: a step-by-step methodological approach for researchers and academics // Informatics. 2026. V. 13. No. 3. Article No. 43. doi: 10.3390/infor-</mixed-citation></ref><ref id="ref30"><mixed-citation publication-type="other" xml:lang="en">Sa I., Ge Z., Dayoub F., Upcroft B., Perez T., Mc- Cool C. DeepFruits: a fruit detection system using deep neural networks // Sensors. 2016. V. 16. No. 8. Article No. 1222. doi: 10.3390/s16081222</mixed-citation></ref><ref id="ref31"><mixed-citation publication-type="other" xml:lang="en">Fallico N. Exploring Research Rabbit: your new favourite reference manager // Medical Writing. 2025. V. 34. No. 1. P. 67–69. doi: 10.56012/wxzm3433</mixed-citation></ref><ref id="ref32"><mixed-citation publication-type="other" xml:lang="en">Zhang Y., Long J., Zhao W. The curvilinear relation- ships between relational embeddedness and dynamic capabili- ties: the mediating effect of ambidextrous learning // Front. Psychol. 2022. V. 13. Article No. 830377. doi: 10.3389/ fpsyg.2022.830377</mixed-citation></ref><ref id="ref33"><mixed-citation publication-type="other" xml:lang="en">Correa-Garcia S., Constant P., Yergeau E. The forecasting power of the microbiome // Trends Micro- biol. 2022. V. 31. No. 5. P. 444–452. doi: 10.1016/j. tim.2022.11.013</mixed-citation></ref><ref id="ref34"><mixed-citation publication-type="other" xml:lang="en">De Andrade V.H.G.Z., Redmile-Gordon M., Barbosa B.H.G., Andreote F.D., Roesch L.F.W., Pylro V.S. Artificially intelligent soil quality and health indices for ‘next generation’ food production systems // Trends Food Sci. Tech- nol. 2021. V. 107. P. 195–200. doi: 10.1016/j.tifs.2020.10.018</mixed-citation></ref><ref id="ref35"><mixed-citation publication-type="other" xml:lang="en">Wilhelm R.C., van Es H.M., Buckley D.H. Pre- dicting measures of soil health using the microbiome and supervised machine learning // Soil Biol. Biochem. 2022. V. 164. Article No. 108472. doi: 10.1016/j.soilbio.2021.108472</mixed-citation></ref><ref id="ref36"><mixed-citation publication-type="other" xml:lang="en">Breiman L. Random forests // Mach. Learn. 2001. V. 45. P. 5–32. doi: 10.1023/A:1010933404324</mixed-citation></ref><ref id="ref37"><mixed-citation publication-type="other" xml:lang="en">Cortes C., Vapnik V. Support-vector networks // Mach. Learn. 1995. V. 20. P. 273–297. doi: 10.1007/ BF00994018</mixed-citation></ref><ref id="ref38"><mixed-citation publication-type="other" xml:lang="en">Hermans S.M., Buckley H.L., Case B.S., Curran- Cournane F., Taylor M., Lear G. Using soil bacterial com- munities to predict physico-chemical variables and soil quality // Microbiome. 2020. V. 8. No. 1. Article No. 79. doi: 10.1186/s40168-020-00858-1</mixed-citation></ref><ref id="ref39"><mixed-citation publication-type="other" xml:lang="en">Chang H.X., Haudenshield J.S., Bowen C.R., Hartman G.L. Metagenome-wide association study and machine learning prediction of bulk soil microbiome and crop productivity // Front. Microbiol. 2017. V. 8. Article No. 519. doi: 10.3389/fmicb.2017.00519</mixed-citation></ref><ref id="ref40"><mixed-citation publication-type="other" xml:lang="en">Sadeghi S., Petermann B.J., Steffan J.J., Bre- vik E.C., Gedeon C. Predicting microbial responses to changes in soil physical and chemical properties under dif- ferent land management // Appl. Soil Ecol. 2023. V. 188.</mixed-citation></ref><ref id="ref41"><mixed-citation publication-type="other" xml:lang="en">Tajik S., Ayoubi S., Nourbakhsh F. Prediction of soil enzymes activity by digital terrain analysis: compar- ing artificial neural network and multiple linear regres- sion models // Environ. Eng. Sci. 2012. V. 29. No. 8. P. 798–806. doi: 10.1089/ees.2011.0313</mixed-citation></ref><ref id="ref42"><mixed-citation publication-type="other" xml:lang="en">Larsen P.E., Field D., Gilbert J.A. Predicting bacterial community assemblages using an artificial neu- ral network approach // Nat. Methods. 2012. V. 9. No. 6. P. 621–625. doi: 10.1038/nmeth.1975</mixed-citation></ref><ref id="ref43"><mixed-citation publication-type="other" xml:lang="en">Santos E.C., Armas E.D., Crowley D., Lambais M.R. Artificial neural network modeling of microbial com- munity structures in the Atlantic Forest of Brazil // Soil Biol. Biochem. 2014. V. 69. P. 101–109. doi: 10.1016/j. soilbio.2013.10.049</mixed-citation></ref><ref id="ref44"><mixed-citation publication-type="other" xml:lang="en">Shirokih I.G., Bokov N.A., Shirokih A.A., Ashikh- mina T.Ya. Antibiotic resistance profiles of streptomycetes from different soils of the Vyatka Prikamye // Theoretical and Applied Ecology. 2026. No. 2. P. 183–191 (in Russian). doi: 10.25750/1995-4301-2026-2-183-191</mixed-citation></ref><ref id="ref45"><mixed-citation publication-type="other" xml:lang="en">Langley P. The changing science of machine lear- ning // Mach. Learn. 2011. V. 82. P. 275–279. doi: 10.1007/</mixed-citation></ref><ref id="ref46"><mixed-citation publication-type="other" xml:lang="en">LeCun Y., Bengio Y., Hinton G. Deep learning // Nature. 2015. V. 521. No. 7553. P. 436–444. doi: 10.1038/ nature14539</mixed-citation></ref><ref id="ref47"><mixed-citation publication-type="other" xml:lang="en">Ghannam R.B., Techtmann S.M. Machine learn- ing applications in microbial ecology, human microbiome ТЕОРЕТИЧЕСКИЕ ПРОБЛЕМЫ ЭКОЛОГИИ Теорeтическая и прикладная экология. 2026. № 3 / Theoretical and Applied Ecology. 2026. No. 3 studies, and environmental monitoring // Comput. Struct. Biotechnol. J. 2021. V. 19. P. 1092–1107. doi: 10.1016/j. csbj.2021.01.028</mixed-citation></ref><ref id="ref48"><mixed-citation publication-type="other" xml:lang="en">Pace R., Schiano Di Cola V., Monti M.M., Affinito A., Cuomo S., Loreto F., Ruocco M. Artificial intelligence in soil microbiome analysis: a potential application in predicting and enhancing soil health – a review // Discov. Appl. Sci. 2025. V. 7. Article No. 85. doi: 10.1007/s42452-024-06381-4</mixed-citation></ref><ref id="ref49"><mixed-citation publication-type="other" xml:lang="en">Iadanza E., Fabbri R., Bašić-Čičak D., Amedei A., Telalovic J.H. Gut microbiota and artificial intelligence ap- proaches: a scoping review // Health Technol. 2020. V. 10. P. 1343–1358. doi: 10.1007/s12553-020-00486-7</mixed-citation></ref><ref id="ref50"><mixed-citation publication-type="other" xml:lang="en">Gewers F.L., Ferreira G.R., de Arruda H.F., Silva F.N., Comin C.H., Amancio D.R., Costa L.F. Principal compo- nent analysis: a natural approach to data exploration // ACM Comput. Surv. 2021. V. 54. No. 4. Article No. 70. doi: 10.1145/3447755</mixed-citation></ref><ref id="ref51"><mixed-citation publication-type="other" xml:lang="en">Van der Maaten L., Hinton G. Visualizing data us- ing t-SNE // J. Mach. Learn. Res. 2008. V. 9. P. 2579–2605.</mixed-citation></ref><ref id="ref52"><mixed-citation publication-type="other" xml:lang="en">Becht E., McInnes L., Healy J., Dutertre C.A., Kwok I.W.H., Ng L.G., Ginhoux F., Newell E.W. Dimensio- nality reduction for visualizing single-cell data using UMAP // Nat. Biotechnol. 2019. V. 37. P. 38–44. doi: 10.1038/nbt.4314</mixed-citation></ref><ref id="ref53"><mixed-citation publication-type="other" xml:lang="en">Zeng T., Yu X., Chen Z. Applying artificial intel- ligence in the microbiome for gastrointestinal diseases: a review // J. Gastroenterol. Hepatol. 2021. V. 36. No. 4. P. 832–840. doi: 10.1111/jgh.1550</mixed-citation></ref><ref id="ref54"><mixed-citation publication-type="other" xml:lang="en">Friedman J.H. Stochastic gradient boosting // Comput. Stat. Data Anal. 2002. V. 38. No. 4. P. 367–378. doi: 10.1016/S0167-9473(01)00065-2</mixed-citation></ref><ref id="ref55"><mixed-citation publication-type="other" xml:lang="en">LeCun Y., Boser B., Denker J.S., Henderson D., Howard R.E., Hubbard W., Jackel L.D. Backpropagation applied to handwritten zip code recognition // Neural Comput. 1989. V. 1. No. 4. P. 541–551. doi: 10.1162/ neco.1989.1.4.541</mixed-citation></ref><ref id="ref56"><mixed-citation publication-type="other" xml:lang="en">Hopfield J.J. Neural networks and physical systems with emergent collective computational abili- ties // Proc. Natl. Acad. Sci. USA. 1982. V. 79. No. 8. P. 2554–2558. doi: 10.1073/pnas.79.8.255</mixed-citation></ref><ref id="ref57"><mixed-citation publication-type="other" xml:lang="en">Liou C.Y., Cheng W.C., Liou J.W., Liou D.R. Autoencoder for words // Neurocomputing. 2014. V. 139. P. 84–96. doi: 10.1016/j.neucom.2013.09.055</mixed-citation></ref><ref id="ref58"><mixed-citation publication-type="other" xml:lang="en">Oh M., Zhang L. DeepMicro: deep representation learning for disease prediction based on microbiome data // Sci. Rep. 2020. V. 10. No. 1. Article No. 6026. doi: 10.1038/ s41598-020-63159-5</mixed-citation></ref><ref id="ref59"><mixed-citation publication-type="other" xml:lang="en">Cuomo S., de Rosa M., Piccialli F., Pompameo L., Vocca V. A numerical approach for soil microbiota growth prediction through physics-informed neural network // Appl. Numer. Math. 2024. V. 207. P. 97–110. doi: 10.1016/j.</mixed-citation></ref><ref id="ref60"><mixed-citation publication-type="other" xml:lang="en">Papoutsoglou G., Tarazona S., Lopes M.B., Klam- msteiner T., Ibrahimi E., Eckenberger J., Novielli P., Tonda A., Simeon A., Shigdel R., Béreux S., Vitali G., Tangaro S., Lahti L., Temko A., Claesson M.J., Berland M. Machine learning approaches in microbiome research: challenges and best practices // Front. Microbiol. 2023. V. 14. Article No. 1261889. doi: 10.3389/fmicb.2023.1261889</mixed-citation></ref><ref id="ref61"><mixed-citation publication-type="other" xml:lang="en">Deng Z., Zhang J., Li J., Zhang X. Application of deep learning in plant–microbiota association analysis // Front. Genet. 2021. V. 12. Article No. 697090. doi: 10.3389/ fgene.2021.697090</mixed-citation></ref><ref id="ref62"><mixed-citation publication-type="other" xml:lang="en">Zhao B., Jin W., Del Ser J., Yang G. ChatAgri: Ex- ploring potentials of ChatGPT on cross-linguistic agricul- tural text classification // Neurocomputing. 2023. V. 557. Article No. 126708. doi: 10.1016/j.neucom.2023.126708</mixed-citation></ref><ref id="ref63"><mixed-citation publication-type="other" xml:lang="en">Popova L.V., Gorshkova N.V., Shaldokhina S.Yu. The introduction of Agriculture technology 4.0: conditions and forecasts // Bulletin of the Adyghe State University, Series “Economics”. 2019. No. 1. P. 83–89 (in Russian).</mixed-citation></ref><ref id="ref64"><mixed-citation publication-type="other" xml:lang="en">Zayats O.A., Nazarova Yu.N., Strizhakova E.A., Penkova R.I. Big Data technologies in agriculture // Fun- damental research. 2022. No. 7. P. 35–40 (in Russian). doi: 10.17513/fr.43280</mixed-citation></ref><ref id="ref65"><mixed-citation publication-type="other" xml:lang="en">Cravero A., Pardo S., Sepúlveda S., Muñoz L. Chal- lenges to use machine learning in agricultural Big Data: a systematic literature review // Agronomy. 2022. V. 12. No. 3. Article No. 748. doi: 10.3390/agronomy12030748</mixed-citation></ref><ref id="ref66"><mixed-citation publication-type="other" xml:lang="en">Raevskaya E.G. Introducing artificial intelligence in Chinese agriculture (review) // Agrarnaya nauka Euro- Severo-Vostoka. 2024. V. 25. No. 5. P. 739–753 (in Rus- sian). doi: 10.30766/2072-9081.2024.25.5.739-753</mixed-citation></ref><ref id="ref67"><mixed-citation publication-type="other" xml:lang="en">Fenu G., Malloci F.M. DSS LANDS: a decision support system for agriculture in Sardinia // HighTech and Innovation Journal. 2020. V. 1. No. 3. P. 129–135. doi: 10.28991/HIJ-2020-01-03-05</mixed-citation></ref><ref id="ref68"><mixed-citation publication-type="other" xml:lang="en">Folorunso O., Ojo O., Busari M., Adebayo M., Joshua A., Folorunso D., Ugwunna C.O., Olabanjo O., Olabanjo O. Ex- ploring machine learning models for soil nutrient properties prediction: a systematic review // Big Data Cogn. Comput. 2023. V. 7. No. 2. Article No. 113. doi: 10.3390/bdcc7020113</mixed-citation></ref><ref id="ref69"><mixed-citation publication-type="other" xml:lang="en">Shen Y., Song K., Tan X., Li D., Lu W., Zhuang Y. HuggingGPT: solving AI tasks with ChatGPT and its friends in Hugging Face // Advances in Neural Information Processing Systems: proceedings of the 37th conference on neural information processing systems. 2024. V. 36. P. 38154–38180. doi: 10.52202/075280-1657</mixed-citation></ref><ref id="ref70"><mixed-citation publication-type="other" xml:lang="en">Zhu H., Qin S., Su M., Lin C., Li A., Gao J. Har- nessing large vision and language models in agriculture: a review // Front. Plant Sci. 2025. V. 16. Article No. 1579355. doi: 10.3389/fpls.2025.1579355</mixed-citation></ref><ref id="ref71"><mixed-citation publication-type="other" xml:lang="en">Radford A., Kim J.W., Xu T., Brockman G., McLeavey C., Sutskever I. Robust speech recognition via large-scale weak supervision // Proceedings of the 40th International Conference on Machine Learning. Honolulu, 2023. V. 202. P. 28492–28518.</mixed-citation></ref><ref id="ref72"><mixed-citation publication-type="other" xml:lang="en">Ren Y., Ruan Y., Tan X., Qin T., Zhao S., Zhao Z., Liu T.Y. FastSpeech: Fast, robust and controllable text to speech // Advances in neural information processing systems: proceedings of the 33rd conference on neural information processing systems. Vancouver, 2019. V. 32. No. 285. P. 3171–3180.</mixed-citation></ref></ref-list></back></article>
